File:Spatial ancestry analysis of Chilean and others.jpg

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English: Spatial ancestry analysis of Chilean population. (a) All populations, (b) Chilean and African populations, (c) Chilean and European populations and (d) Chilean and Native-American populations. Chileans appear in black with its global African, European and Native-American ancestry proportions in (b), (c) and (d), respectively, as estimated by local ancestry methods. Figure a shows that the spatial analysis clearly separates the three ancestral population and, as expected, the admixed Chileans are scattered between the European and the Native-Americans. We restrict our spatial analysis to the Chileans with each of its ancestral populations. Figure b shows the Chilean-admixed population clearly separated from the African populations. Within Africans, the Yoruba in Ibadan, Nigeria (YRI) and the Luhya in Webuye, Kenya (LWK) are close together, but the African Ancestry from Southwest United States (ASW) is spread along a line and is the closest to the Chileans. Figure c shows that the Europeans are separated into two groups, Britain (GBR) and North Europe (CEU) together and Spaniards and Italians together, closer to the Chileans. Figure d shows the Chileans together with the Native-Americans. Figure b–d shows the Chileans with their global proportion of African, European and Native-American ancestry, respectively, estimated by the LAI method. We observe consistency between the ancestral proportion estimates given by the LAI (Local ancestry inference) methods and the spatial ancestry analysis as individuals with higher/lower proportion in ancestry are closer/farther to the ancestral populations.
Date Published 17 March 2015
Source Susana Eyheramendy et al. "Genetic structure characterization of Chileans reflects historical immigration patterns." Nature Communications 6, Article number: 6472 doi:10.1038/ncomms7472 http://www.nature.com/ncomms/2015/150317/ncomms7472/full/ncomms7472.html
Author Susana Eyheramendy, Felipe I. Martinez, Federico Manevy, Cecilia Vial & Gabriela M. Repetto
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Ancestry proportions of Chilean indivisuals.
Ancestry proportions per zones.
Population IDs
CHL: Chilean, NAT: Native American, EUR: European, AFR: African
ID country description Group Sample size Source
CHL Chile Chile Chilean CHL 313 This study
AYM Aymara NAT 25 Bigham, A (2009), Bigham, A (2010)
QUE Quechua NAT 24 Bigham, A (2009), Bigham, A (2010)
NAH Mexico Mexico Nahua, Mixtec, Tlapanec NAT 14 Bigham, A (2009), Bigham, A (2010)
MAY Maya NAT 25 Bigham, A (2009), Bigham, A (2010)
CEU United States of America United States of America Utah residents with Northern and Western European ancestry from the CEPH collection EUR 85 1000 Genomes Project
GBR United Kingdom United Kingdom British EUR 89 1000 Genomes Project
IBS Spain Spain Iberians from Spain EUR 14 1000 Genomes Project
SPN Spain Spain EUR 625 POPRES
TSI Italy Italy Toscani in Italy EUR 98 1000 Genomes Project
ASW United States of America United States of America African Ancestry from Southwest United States AFR 56 1000 Genomes Project
LWK Kenya Kenya Luhya in Webuye, Kenya AFR 85 1000 Genomes Project
YRI Nigeria Nigeria Yoruba in Ibadan, Nigeria AFR 88 1000 Genomes Project

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current11:39, 12 June 2016Thumbnail for version as of 11:39, 12 June 2016946 × 778 (102 KB)Was a bee (talk | contribs){{Information |Description={{en|1=Spatial_ancestry_analysis_of_Chilean population. ('''a''') All populations, ('''b''') Chilean and African populations, ('''c''') Chilean and European populations and ('''d''') Chilean and Native-American populations. C...

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