File:BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s012.ogv
From Wikimedia Commons, the free media repository
Jump to navigation
Jump to search
No higher resolution available.
BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s012.ogv (Ogg Theora video file, length 20 s, 720 × 540 pixels, 3.73 Mbps, file size: 8.87 MB)
File information
Structured data
Captions
Summary
[edit]DescriptionBSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s012.ogv |
English: Synchronized genetic oscillators. Simulation of 200 bacteria swimming randomly in a 100×100×100 micron volume with wrapping boundary conditions. Each bacterium uses a system of ODEs to model the essential dynamics of the repressilator gene regulatory network. All bacteria are initialized with random initial conditions, but quickly become synchronized due to AHL communication. The color of the bacteria corresponds to their internal level of lacI mRNA, with yellow representing a low and red a high level. AHL concentration within the environment is shown in blue. |
||
Date | |||
Source | Video S2 from Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M (2012). "BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology". PLOS ONE. DOI:10.1371/journal.pone.0042790. PMID 22936991. PMC: 3427305. | ||
Author | Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M | ||
Permission (Reusing this file) |
|
||
Provenance InfoField |
|
File history
Click on a date/time to view the file as it appeared at that time.
Date/Time | Thumbnail | Dimensions | User | Comment | |
---|---|---|---|---|---|
current | 10:05, 14 November 2012 | 20 s, 720 × 540 (8.87 MB) | Open Access Media Importer Bot (talk | contribs) | Automatically uploaded media file from Open Access source. Please report problems or suggestions here. |
You cannot overwrite this file.
File usage on Commons
There are no pages that use this file.
Transcode status
Update transcode statusMetadata
This file contains additional information such as Exif metadata which may have been added by the digital camera, scanner, or software program used to create or digitize it. If the file has been modified from its original state, some details such as the timestamp may not fully reflect those of the original file. The timestamp is only as accurate as the clock in the camera, and it may be completely wrong.
Author | Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M |
---|---|
Usage terms | http://creativecommons.org/licenses/by/3.0/ |
Image title | |
Software used | Xiph.Org libtheora 1.1 20090822 (Thusnelda) |
Date and time of digitizing | 2012 |