File:BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s011.ogv
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BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s011.ogv (Ogg Theora video file, length 1 min 17 s, 800 × 600 pixels, 150 kbps, file size: 1.38 MB)
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[edit]DescriptionBSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s011.ogv |
English: Multicellular computing with chemical wires. Simulation of four populations of bacteria (20000 bacteria per population) communicating via chemical signals to calculate the EQUAL logic function. Inputs take the form of chemicals within the medium that remain constant throughout the simulation, specifically, arabinose (Ara) and anhydrotetracycline (aTc). Communication between populations is via two diffusive chemical fields (3OC12-HSL in red and C4-HSL in blue), and activation of individual bacteria is shown by their color with grey being inactive. For this simulation Ara and aTc are not present with the final resting state of population 4 being active, shown by the green color. |
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Source | Video S1 from Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M (2012). "BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology". PLOS ONE. DOI:10.1371/journal.pone.0042790. PMID 22936991. PMC: 3427305. | ||
Author | Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M | ||
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Date/Time | Thumbnail | Dimensions | User | Comment | |
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current | 10:05, 14 November 2012 | 1 min 17 s, 800 × 600 (1.38 MB) | Open Access Media Importer Bot (talk | contribs) | Automatically uploaded media file from Open Access source. Please report problems or suggestions here. |
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Author | Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M |
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Usage terms | http://creativecommons.org/licenses/by/3.0/ |
Image title | Multicellular computing with chemical wires. Simulation of four populations of bacteria (20000 bacteria per population) communicating via chemical signals to calculate the EQUAL logic function. Inputs take the form of chemicals within the medium that remain constant throughout the simulation, specifically, arabinose (Ara) and anhydrotetracycline (aTc). Communication between populations is via two diffusive chemical fields (3OC12-HSL in red and C4-HSL in blue), and activation of individual bacteria is shown by their color with grey being inactive. For this simulation Ara and aTc are not present with the final resting state of population 4 being active, shown by the green color. |
Software used | Xiph.Org libtheora 1.1 20090822 (Thusnelda) |
Date and time of digitizing | 2012 |