File:A-Jump-from-Cavity-Pyrophosphate-Ion-Release-Assisted-by-a-Key-Lysine-Residue-in-T7-RNA-Polymerase-pcbi.1004624.s013.ogv
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Size of this JPG preview of this OGG file: 697 × 600 pixels. Other resolutions: 279 × 240 pixels | 558 × 480 pixels | 860 × 740 pixels.
Original file (Ogg Theora video file, length 13 s, 860 × 740 pixels, 11.92 Mbps, file size: 18.23 MB)
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[edit]DescriptionA-Jump-from-Cavity-Pyrophosphate-Ion-Release-Assisted-by-a-Key-Lysine-Residue-in-T7-RNA-Polymerase-pcbi.1004624.s013.ogv |
English: The movie was mode from one of the above SMD simulations ( direction 1 in S5 Fig ), pulling PPi (in vdW spheres) from the inside to the outside in nanoseconds. In the movie, the nucleic acids are shown in yellow, the protein is shown in white, and the O-helix is highlighted in cyan. The three positively charged residue Lys631, Arg627, and Lys472 are shown in blue, the two negatively charged residue Asp537 and Asp812 are shown in red, and the two magnesium ions are in green. In particular, Lys472 is also highlighted in vdW spheres. The Lys472 side chain closely follows the PPi group, although the SMD force was only implemented on the PPi group but not on Lys472. |
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Source | S1 Movie from Da L, E C, Duan B, Zhang C, Zhou X, Yu J (2015). "A Jump-from-Cavity Pyrophosphate Ion Release Assisted by a Key Lysine Residue in T7 RNA Polymerase Transcription Elongation". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1004624. PMID 26599007. PMC: 4658072. | ||
Author | Da L, E C, Duan B, Zhang C, Zhou X, Yu J | ||
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![]() ![]() This file is licensed under the Creative Commons Attribution 4.0 International license.
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Date/Time | Thumbnail | Dimensions | User | Comment | |
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current | 12:52, 8 December 2015 | 13 s, 860 × 740 (18.23 MB) | Open Access Media Importer Bot (talk | contribs) | Automatically uploaded media file from Open Access source. Please report problems or suggestions here. |
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Short title | The movie was mode from one of the above SMD simulations ( direction 1 in S5 Fig ), pulling PPi (in vdW spheres) from the inside to the outside in nanoseconds. |
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Author | Da L, E C, Duan B, Zhang C, Zhou X, Yu J |
Usage terms | http://creativecommons.org/licenses/by/4.0/ |
Image title | In the movie, the nucleic acids are shown in yellow, the protein is shown in white, and the O-helix is highlighted in cyan. The three positively charged residue Lys631, Arg627, and Lys472 are shown in blue, the two negatively charged residue Asp537 and Asp812 are shown in red, and the two magnesium ions are in green. In particular, Lys472 is also highlighted in vdW spheres. The Lys472 side chain closely follows the PPi group, although the SMD force was only implemented on the PPi group but not on Lys472. |
Software used | Xiph.Org libtheora 1.1 20090822 (Thusnelda) |
Date and time of digitizing | 2015-11-24 |