File:Fst Japanese.png

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English: To evaluate genetic differentiation among different regions in Japan, a measure of genetic differentiation, Fst, between each pair of subpopulations at each SNP site was estimated, and average Fst values over all the autosomes were calculated. There is a remarkable genetic differentiation between Okinawa and other regions in Japan. The Fst values between Okinawa and the regions in Hondo were 0.00282–0.00352, whereas those for pairs of subpopulations in Hondo were much smaller (0.00023–0.00077).


Data is from Table 2 in the source below, and visualized using Excel. Sorted based on degree of differentiation from Kanto-Koshinetsu (in where Tokyo located).
Date Published online 2008 Oct 3
Source Yamaguchi-Kabata Y, Nakazono K, Takahashi A, et al. Japanese Population Structure, Based on SNP Genotypes from 7003 Individuals Compared to Other Ethnic Groups: Effects on Population-Based Association Studies. American Journal of Human Genetics. 2008;83(4):445-456. doi:10.1016/j.ajhg.2008.08.019. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2561928/
Author Yumi Yamaguchi-Kabata, Kazuyuki Nakazono, Atsushi Takahashi, Susumu Saito, Naoya Hosono, Michiaki Kubo, Yusuke Nakamura, and Naoyuki Kamatani
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