File:Fmicb-03-00213-a003 (14422818342).jpg
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Source: Front. Microbiol., 19 June 2012 | doi:10.3389/fmicb.2012.00213 Diversity and distribution of marine Synechococcus: multiple gene phylogenies for consensus classification and development of qPCR assays for sensitive measurement of clades in the ocean Nathan A. Ahlgren and Gabrielle Rocap Figure A3. Phylogenetic tree based on 648 nucleotide positions of the narB gene. Tree construction, bootstrap analysis, and taxa and clade labels as the same as described in Figure A1. Because of the large number of sequences, selected sequences are grouped together and represented by trapezoids. The number inside the trapezoid indicates the number of sequences in that group. Strains within those groups that have been used in the concatenated tree (Figure A6) are shown to the right of the trapezoids. The assignment of narB sequences to groups according to Paerl et al. (2011) is indicated with dashed lines. Group A, Group B, and Group G encompass multiple well-established clades as defined by phylogenies of other loci. Numbers below group names indicate the number of total mismatches that sequences within the group have to the primers and probe sets described in Paerl et al. (2011) (0 mismatches/1 or 2 total mismatches/>2 mismatches). For Group G which contains multiple clades as defined by other loci, the number of mismatches is also given for sequences belonging to clades II, III, and XV. Two primer and probe sets were designed to detect subgroups of Group D, D_C1, and D_C2 (designated with blue lines), and the number of mismatches that sequences have to their respective primer probe sets are given. |
| Date | |
| Source | fmicb-03-00213-a003 |
| Author | Phylogeny Figures |
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This image was originally posted to Flickr by phylofigures at https://flickr.com/photos/123636286@N02/14422818342. It was reviewed on 19 December 2020 by FlickreviewR 2 and was confirmed to be licensed under the terms of the cc-by-2.0. |
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