File:Fcimb-02-00057-g003 (14421113162).jpg
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Source: Front. Cell. Infect. Microbiol., 01 May 2012 | doi:10.3389/fcimb.2012.00057 A framework for assessing the concordance of molecular typing methods and the true strain phylogeny of Campylobacter jejuni and C. coli using draft genome sequence data Catherine D. Carrillo, Peter Kruczkiewicz, Steven Mutschall, Andrei Tudor, Clifford Clark and Eduardo N. Taboada Figure 3. In silico typing data derived from C. jejuni and C. coli and WGS is concordant with core genome phylogeny. Publicly available WGS data for 104 C. jejuni (A) and C. coli (B) strains were used to derive typing profiles using an in silico typing pipeline. Although the dataset is comprised of highly genetically diverse strains, there is concordance between molecular typing and phylogenetic data: strains sharing similar/identical molecular fingerprints were found clustered in the dendrogram and increasing similarity led to shorter branch lengths. CGF cluster numbers are based on 90 and 95% fingerprint identity; green is positive, red is negative. MLST alleles that could not be determined are noted as “nd.” |
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| Source | fcimb-02-00057-g003 |
| Author | Phylogeny Figures |
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This image was originally posted to Flickr by phylofigures at https://flickr.com/photos/123636286@N02/14421113162. It was reviewed on 19 December 2020 by FlickreviewR 2 and was confirmed to be licensed under the terms of the cc-by-2.0. |
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