File:Correspondence analysis plot for the mainland population, Amami Islanders and Okinawa Islanders.png

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English: Correspondence analysis plot of the first and second principal components for the mainland population, Amami Islanders and Okinawa Islanders.

Correspondence analysis for the mainland population, Amami Islanders and Okinawa Islanders was conducted using six loci. The scree plot is shown in the upper right corner of this figure.

In the CA plot for the first and second principal components, the Okinawa Islanders are also slightly more distant from the mainland population than the Amami Islanders are . That is, the CA result is generally consistent with the pattern suggested by the relative paired FST values with respect to the distance separation among the three groups.
Date Published: April 3, 2012
Source Nishiyama T, Kishino H, Suzuki S, Ando R, Niimura H, Uemura H, et al. (2012) Detailed Analysis of Japanese Population Substructure with a Focus on the Southwest Islands of Japan. PLoS ONE 7(4): e35000. doi:10.1371/journal.pone.0035000 http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0035000
Author Takeshi Nishiyama, Hirohisa Kishino, Sadao Suzuki, Ryosuke Ando, Hideshi Niimura, Hirokazu Uemura, Mikako Horita, Keizo Ohnaka, Nagato Kuriyama, Haruo Mikami, Naoyuki Takashima, Keitaro Mastuo, Yin Guang, Kenji Wakai, Nobuyuki Hamajima, Hideo Tanaka, for the J-MICC Study Group
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(Reusing this file)		 This is an open-access article distributed under the terms of the Creative Commons Attribution License
Other versions
  • Geographic locations of the populations
    Geographic locations of the populations
  • Correspondence analysis
    Correspondence analysis
  • Correspondence analysis
    Correspondence analysis
  • PCA
    PCA
  • PCA
    PCA
  • Fst
    Fst
  • Heterozygosity
    Heterozygosity
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