File:Clustering of PASNP population groups by selection signals.jpg

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Description
English: Clustering of PASNP (HUGO Pan-Asian SNP Consortium) population groups by selection signals. Hierarchical clustering of the 31 PASNP population groups according to the absence or presence of the 59 positive selection signals that have been identified by haploPS. Each of the 59 signals is present in at least one of the 31 population groups. The hierarchical clustering is performed using the Ward’s minimum variance method with the hclust command in R. Populations found in one of the major branches correspond to indigenous populations from Malaysia, Philippines, Thailand and China (upper purple box), while populations found in one of the sub-branches correspond to those in northern East Asia (lower red box).
Date Published: 2 May 2014
Source Xuanyao Liu, Woei-Yuh Saw, Mohammad Ali, Rick Twee-Hee Ong and Yik-Ying Teo, "Evaluating the possibility of detecting evidence of positive selection across Asia with sparse genotype data from the HUGO Pan-Asian SNP Consortium" BMC Genomics 201415:332 DOI: 10.1186/1471-2164-15-332 http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-332
Author Xuanyao Liu, Woei-Yuh Saw, Mohammad Ali, Rick Twee-Hee Ong and Yik-Ying Teo
Other versions
PCA study
Phylogenetic tree

Population IDs

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Population IDs
Population ID Details Country
  JP-RK
Ryukyuan in Japan Japan Japan
  JP-ML
Japanese in mainland, Japan Japan Japan
  JPT
Japanese in Tokyo, Japan Japan Japan
  KR-KR
Korean in Korea South Korea South Korea
  CHB
Han Chinese in Beijing, China People's Republic of China People's Republic of China
  CN-SH
Han Chinese in Shanghai, China People's Republic of China People's Republic of China
  TW-HA
Han Chinese in Taiwan Taiwan Taiwan
  TW-HB
Han Chinese in Taiwan Taiwan Taiwan
  SG-CH
Chinese in Singapore Singapore Singapore
  CN-GA
Han Chinese in Guangdong, China People's Republic of China People's Republic of China
  CN-HM
Hmong in China People's Republic of China People's Republic of China
  TH-HM
Hmong in Thailand Thailand Thailand
  TH-YA
Yao in Thailand Thailand Thailand
  CN-JI
Jiamao in China People's Republic of China People's Republic of China
  CN-CC
Zhuang in China People's Republic of China People's Republic of China
  TH-TY
Tai Yong in Thailand Thailand Thailand
  TH-TL
Tai Lue in Thailand Thailand Thailand
  TH-TK
Tai Kern in Thailand Thailand Thailand
  TH-TU
Tai Yuan in Thailand Thailand Thailand
  TH-TN
H'Tin in Thailand Thailand Thailand
  TH-MA
Mlabri in Thailand Thailand Thailand
  TH-PP
Plang in Thailand Thailand Thailand
  CN-WA
Wa in China People's Republic of China People's Republic of China
  TH-KA
Karen in Thailand Thailand Thailand
  TH-LW
Lawa in Thailand Thailand Thailand
  TH-PL
Palong in Thailand Thailand Thailand
  CN-JN
Jinuo in China People's Republic of China People's Republic of China
  ID-AL
Alorese in Indonesia Indonesia Indonesia
  AX-ME
Melanesian in Pacific
  ID-LE
Lembata in Indonesia Indonesia Indonesia
  ID-LA
Lamaholot in Indonesia Indonesia Indonesia
  ID-SO
Manggarai in Indonesia Indonesia Indonesia
  ID-RA
Manggarai in Indonesia Indonesia Indonesia
  ID-SB
Kambera in Indonesia Indonesia Indonesia
  PI-AE
Negrito in the Philippines Philippines Philippines
  PI-AG
Negrito in the Philippines Philippines Philippines
  PI-MW
Negrito in the Philippines Philippines Philippines
  PI-IR
Negrito in the Philippines Philippines Philippines
  PI-AT
Negrito in the Philippines Philippines Philippines
  AX-AT
Atayal in Taiwan Taiwan Taiwan
  AX-AM
Ami in Taiwan Taiwan Taiwan
  PI-UB
Urban in the Philippines Philippines Philippines
  PI-UN
Urban in the Philippines Philippines Philippines
  PI-UI
Urban in the Philippines Philippines Philippines
  PI-MA
Manobo in the Philippines Philippines Philippines
  ID-MT
Mentawai in Indonesia Indonesia Indonesia
  ID-TR
Toraja in Indonesia Indonesia Indonesia
  ID-ML
Malay in Indonesia Indonesia Indonesia
  ID-TB
Batak in Indonesia Indonesia Indonesia
  ID-KR
Batak Karo in Indonesia Indonesia Indonesia
  ID-DY
Dayak in Indonesia Indonesia Indonesia
  MY-MN
Malay (Minangkabau) in Malaysia Malaysia Malaysia
  SG-MY
Malay in Singapore Singapore Singapore
  MY-KN
Malay in Kelantan, Malaysia Malaysia Malaysia
  ID-JV
Javanese in Indonesia Indonesia Indonesia
  ID-JA
Javanese in Indonesia Indonesia Indonesia
  ID-SU
Sundanese in Indonesia Indonesia Indonesia
  MY-BD
Bidayuh in Malaysia Malaysia Malaysia
  MY-KS
Negrito (Kensiu) in Malaysia Malaysia Malaysia
  MY-JH
Negrito (Jehai) in Malaysia Malaysia Malaysia
  MY-TM
Proto-Malay (Temuan) in Malaysia Malaysia Malaysia
  TH-MO
Mon in Thailand Thailand Thailand
  IN-NI
Tharu in India India India
  IN-TB
Ladakhi in India India India
  CN-UG
Uyghur in China People's Republic of China People's Republic of China
  IN-DR
Upper-caste in India (Telugu speaking) India India
  SG-ID
Tamil in Singapore with Indian ancestry (Indian Singaporeans) Singapore Singapore
  IN-WI
Bhil in India India India
  IN-SP
Upper-caste in India (Hindi speaking) India India
  IN-EL
Upper-caste in India (Bengali speaking) India India
  IN-WL
Upper-caste in India (Marathi speaking) India India
  IN-IL
Upper-caste in India (Hindi speaking) India India
  IN-NL
Upper-caste in India (Hindi speaking) India India
  CEU
Utah residents with Northern and Western European ancestry from the CEPH collection (European Americans) United States of America United States of America
  YRI
Yoruba in Ibadan, Nigeria Nigeria Nigeria

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current20:59, 28 June 2016Thumbnail for version as of 20:59, 28 June 2016546 × 568 (75 KB)Was a bee (talk | contribs)== {{int:filedesc}} == {{Information |Description={{en|1=Clustering of PASNP (HUGO Pan-Asian SNP Consortium) population groups by selection signals. Hierarchical clustering of the 31 PASNP population groups according to the absence or presence of the 5...

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