File:Assessment-of-Metagenomic-Assembly-Using-Simulated-Next-Generation-Sequencing-Data-pone.0031386.g004.jpg
From Wikimedia Commons, the free media repository
Jump to navigation
Jump to search
Size of this preview: 477 × 600 pixels. Other resolutions: 191 × 240 pixels | 603 × 758 pixels.
Original file (603 × 758 pixels, file size: 172 KB, MIME type: image/jpeg)
File information
Structured data
Captions
Summary[edit]
DescriptionAssessment-of-Metagenomic-Assembly-Using-Simulated-Next-Generation-Sequencing-Data-pone.0031386.g004.jpg |
English: a) Correlations between expected and actual COG abundance. Dotplots compare the expected and actual abundance for each COG, with the x-axis displaying the COG abundances as expected from the input genomes and the y-axis displaying the COG abundances as determined from assembly and annotation of the simulated metagenomes. The black line shows the 1∶1 correlation. The Pearson correlation coefficients are displayed for each dataset. b) Principal Coordinate Analysis (PCoA) and Principal Component Analysis (PCA). The COG abundance profiles were compared to each other using Jensen-Shannon divergence and the distance matrix was then analyzed plotted using PCoA. The COG abundance profiles were analyzed plotted using PCA. The dots are colored by sequencing method: Illumina contigs (red), Illumina scaftigs (light blue), Sanger (yellow) and pyrosequencing (blue). |
|
Date | ||
Source | Image file from Mende D, Waller A, Sunagawa S, Järvelin A, Chan M, Arumugam M, Raes J, Bork P (2012). "Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data". PLOS ONE. DOI:10.1371/journal.pone.0031386. PMID 22384016. PMC: 3285633. | |
Author | Mende D, Waller A, Sunagawa S, Järvelin A, Chan M, Arumugam M, Raes J, Bork P | |
Permission (Reusing this file) |
This file is licensed under the Creative Commons Attribution 3.0 Unported license.
|
|
Provenance InfoField |
|
File history
Click on a date/time to view the file as it appeared at that time.
Date/Time | Thumbnail | Dimensions | User | Comment | |
---|---|---|---|---|---|
current | 21:55, 11 October 2014 | 603 × 758 (172 KB) | Recitation-bot (talk | contribs) | Automatic upload of media from: doi:10.1371/journal.pone.0031386 |
You cannot overwrite this file.
File usage on Commons
There are no pages that use this file.
Metadata
This file contains additional information such as Exif metadata which may have been added by the digital camera, scanner, or software program used to create or digitize it. If the file has been modified from its original state, some details such as the timestamp may not fully reflect those of the original file. The timestamp is only as accurate as the clock in the camera, and it may be completely wrong.
IIM version | 2 |
---|