File:Wu-Neoaleurodiscus-Maximum Likelihood-Tree.svg
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DescriptionWu-Neoaleurodiscus-Maximum Likelihood-Tree.svg |
Figure. Molecular Phylogenetic analysis by the Maximum Likelihood method of Acanthobasidium, Aleurodiscus (s.s.) and Neoaleurodiscus
The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura-Nei model [1]. The tree with the highest log likelihood (-2842.6486) is shown. The percentage of trees in which the associated taxa clustered together is shown next to the branches. Initial tree(s) for the heuristic search were obtained by applying the Neighbor-Joining method to a matrix of pairwise distances estimated using the Maximum Composite Likelihood (MCL) approach. A discrete Gamma distribution was used to model evolutionary rate differences among sites (5 categories (+G, parameter = 0.1738)). The rate variation model allowed for some sites to be evolutionarily invariable ([+I], 68.6716% sites). The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. The analysis involved 20 nucleotide sequences. There were a total of 964 positions in the final dataset. Evolutionary analyses were conducted in MEGA6 [2]. 1. Tamura K. and Nei M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512-526.
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Author | Thkgk | |||
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current | 08:35, 25 August 2014 | 400 × 477 (20 KB) | Thkgk (talk | contribs) | Andere Darstellung | |
08:02, 25 August 2014 | 400 × 477 (20 KB) | Thkgk (talk | contribs) | {{Information |Description=Figure. '''Molecular Phylogenetic analysis by the Maximum Likelihood method of ''Acanthobasidium'', ''Aleurodiscus'' (s.s.) and ''Neoaleurodiscus'' ''' The evolutionary history was inferred by using the Maximum Likelihood... |
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