File:OPSR.Roni.Fig3.v4.png
Jump to navigation
Jump to search
Size of this preview: 764 × 600 pixels. Other resolutions: 306 × 240 pixels | 612 × 480 pixels | 978 × 768 pixels | 1,280 × 1,005 pixels | 2,560 × 2,010 pixels | 4,258 × 3,343 pixels.
Original file (4,258 × 3,343 pixels, file size: 128 KB, MIME type: image/png)
Captions
Captions
Roniviridae phylogenetic tree
Summary
[edit]
| Description |
English: Roniviridae. Maximum Likelihood phylogenetic tree inferred in MEGA 7.0 (Kumar et al., 2016) from a ClustalW nucleotide sequence alignment of a 661nucleotide region of ORF1b for 21 viruses representing eight identified genotypes in the yellow head virus complex. The aligned sequence extends from within the HEL1 helicase domain (encompassing motifs V, Va and VI) and into the variable region immediately preceding the ExoN exonuclease domain. The evolutionary relationships were inferred by using the Kimura 2-parameter model of nucleotide substitution (Kimura 1980). The initial tree for the heuristic search was obtained automatically by applying Neighbour-Join and BIONJ algorithms to a matrix of pairwise distances estimated using Maximum Composite Likelihood (MCL) method (Lele and Taper 2002), and then selecting the topology with superior log likelihood value. The tree with the highest log likelihood (-3065.67) is shown. Numbers at nodes indicate bootstrap support where these are > 70%. The scale bar indicates 0.05 substitutions per site. |
| Date | |
| Source |
Walker et al., (2021):vICTV Virus Taxonomy Profile: Roniviridae, Journal of General Virology, 102 (1): 001514 https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/roniviridae |
| Author | Peter J. Walker, Jeff A. Cowley, Xuan Dong, Jie Huang, Nick Moody, and John Ziebuhr |
Licensing
[edit]
This file is licensed under the Creative Commons Attribution-Share Alike 4.0 International license.
- You are free:
- to share – to copy, distribute and transmit the work
- to remix – to adapt the work
- Under the following conditions:
- attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
- share alike – If you remix, transform, or build upon the material, you must distribute your contributions under the same or compatible license as the original.
File history
Click on a date/time to view the file as it appeared at that time.
| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 04:47, 25 May 2021 | | 4,258 × 3,343 (128 KB) | Guest2625 (talk | contribs) | Uploaded a work by Peter J. Walker, Jeff A. Cowley, Xuan Dong, Jie Huang, Nick Moody, and John Ziebuhr from Walker et al., (2021):vICTV Virus Taxonomy Profile: Roniviridae, Journal of General Virology, 102 (1): 001514 https://talk.ictvonline.org/ictv-reports/ictv_online_report/positive-sense-rna-viruses/w/roniviridae with UploadWizard |
You cannot overwrite this file.
File usage on Commons
There are no pages that use this file.
File usage on other wikis
The following other wikis use this file:
