File:Fst and TVD of sub-Saharan Africans.jpg
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| Description |
English: Haplotypes capture more population structure than independent loci.
(A) For each population pair, we estimated pairwise FST (upper right triangle) using 328,000 independent SNPs, and TVD (Total Variation Distance, lower left triangle) using population averaged copying vectors from CHROMOPAINTER. TVD measures the difference between two copying vectors. (B) Comparison of pairwise FST and TVD shows that they are not linearly related: some population pairs have low FST and high TVD. (Source data is detailed in Figure 2—source data 2 to Figure 2—source data 1). |
| Date | Published online 2016 Jun 21 |
| Source | Busby GB, Band G, Si Le Q, et al. Admixture into and within sub-Saharan Africa. Pickrell JK, ed. eLife. 2016;5:e15266. doi:10.7554/eLife.15266. https://elifesciences.org/content/5/e15266 |
| Author |
George BJ Busby Gavin Band Quang Si Le Muminatou Jallow Edith Bougama Valentina D Mangano Lucas N Amenga-Etego Anthony Enimil Tobias Apinjoh Carolyne M Ndila Alphaxard Manjurano Vysaul Nyirongo Ogobara Doumba Kirk A Rockett Dominic P Kwiatkowski Chris CA Spencer Malaria Genomic Epidemiology Network Wellcome Trust Centre for Human Genetics, United Kingdom; Wellcome Trust Sanger Institute, United Kingdom; Medical Research Council Unit, The Gambia; Royal Victoria Teaching Hospital, The Gambia; Centre National de Recherche et de Formation sur le Paludisme, Burkina Faso; University of Rome La Sapienza, Italy; Navrongo Health Research Centre, Ghana; Komfo Anokye Teaching Hospital, Ghana; University of Buea, Cameroon; KEMRI-Wellcome Trust Research Programme, Kenya; Kilimanjaro Christian Medical College, Tanzania; London School of Hygiene and Tropical Medicine, United Kingdom; College of Medicine, University of Malawi, Malawi; University of Bamako, Mali |
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
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| current | 09:07, 13 November 2016 | | 3,536 × 2,920 (1.83 MB) | Was a bee (talk | contribs) | == {{int:filedesc}} == {{Information |Description={{en|1=Haplotypes capture more population structure than independent loci. ('''A''') For each population pair, we estimated pairwise F<sub>ST</sub> (upper right triangle) using 328,000 independent SNPs,... |
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