File:Fpls-03-00001-g011 (14422963004).jpg

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Source: Front. Plant Sci., 13 January 2012 | doi:10.3389/fpls.2012.00001 Protein phylogenetic analysis of Ca2+/cation antiporters and insights into their evolution in plants Laura Emery, Simon Whelan, Kendal D. Hirschi and Jon K. Pittman

Figure 11. Structural and phylogenetic comparisons of CAX and EF–CAX proteins. (A) Schematic representation of the topology structure of a typical CAX protein (Arabidopsis CAX1) and a representative EF–CAX protein (Arabidopsis EFCAX1). The black line denotes the protein from N-terminus to C-terminus, red bars denote the TM domains as predicted by TMHMM, and the numbers indicate the first and last amino acid residues. The locations of the α1- and α2-repeat regions are highlighted. The identified Pfam domains are indicated above the protein schematic. (B) CAX gene family phylogenetic tree including the EF–CAX genes. The tree was constructed using the maximum likelihood method and derived from alignments of α2-repeat region sequences extracted from genes identified in the CAX group of the full CaCA tree (Figure 3) and the EF–CAX genes as determined by Pfam analysis. The CAX sub-groups are highlighted in addition to the EF–CAX sub-group. Branch labels include the species name abbreviation defined in Figure 2 or are replaced by a circle and are colored according to the species class using the same color code as in Figure 3. The branch length scale bar indicates the evolutionary distance of 0.6 amino acid substitutions per site.
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Source fpls-03-00001-g011
Author Phylogeny Figures

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