File:Expected heterozygosity of Mlabri.png
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DescriptionExpected heterozygosity of Mlabri.png |
English: Heterozygosity in 17 populations. Expected heterozygosity for SNPs (HSe) were calculated based on allele frequencies of 55,561 SNPs shared by 17 populations and the results were shown in Figure A. The HSe in Mlabri (0.197) is lower than that of any of other populations in which HSe is at least 0.250 (HM). The expected heterozygosity for haplotypes (HHe) were calculated based on haplotypes in 500-kb genomic regions (Methods) and the results are shown in Figure B. The HHe in Mlabri (0.666) is also much lower than that of any of other populations in which HHe is at least 0.820 (TN). The HHe comparison obtained from larger size of genomic regions (1 Mb) show the similar results (see Additional file 1, Figure S1). All the above comparisons are statistically significant (t-test, p < 10-5). In table at the bottom of each plot displayed the average and the standard deviation of He in each population sample. For population IDs, see below. |
Date | Published: 19 March 2010 |
Source | Xu S, Kangwanpong D, Seielstad M, et al. Genetic evidence supports linguistic affinity of Mlabri - a hunter-gatherer group in Thailand. BMC Genetics. 2010;11:18. doi:10.1186/1471-2156-11-18. https://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156-11-18 |
Author | Shuhua Xu, Daoroong Kangwanpong, Mark Seielstad, Metawee Srikummool, Jatupol Kampuansai, Li JinEmail author and The HUGO Pan-Asian SNP Consortium |
Other versions |
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Population ID
[edit]
Population ID |
Ethnicity |
Language family |
Language |
Sample-size |
---|---|---|---|---|
JPT |
Japanese |
Japonic |
Japanese |
44 |
CHB |
Han |
Sino-Tibetan |
Chinese |
45 |
HM |
Hmong |
Hmong-Mien |
Hmong |
20 |
YA |
Yao |
Hmong-Mien |
Iu-Mien |
19 |
TL |
Tai Lue |
Tai-Kadai |
Lue |
20 |
TY |
Tai Yong |
Tai-Kadai |
Yong |
18 |
TK |
Tai Kern |
Tai-Kadai |
Kern |
18 |
TU |
Tai Yuan |
Tai-Kadai |
Yuan |
20 |
PL |
Palong |
Austro-Asiatic |
Palong |
18 |
KA |
Karen |
Sino-Tibetan |
Karen |
20 |
LW |
Lawa |
Austro-Asiatic |
Lawa |
19 |
PP |
Plang |
Austro-Asiatic |
Blang |
18 |
TN |
Htin |
Austro-Asiatic |
Mal |
18 |
MA |
Mlabri |
Austro-Asiatic |
Mlabri |
18 |
MO |
Mon |
Austro-Asiatic |
Mon |
19 |
CEU |
European |
Indo-European |
English |
60 |
YRI |
Yoruba |
Niger-Congo |
Yoruba |
60 |
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current | 14:34, 24 January 2017 | 1,200 × 1,015 (383 KB) | Was a bee (talk | contribs) | {{Information |Description={{en|1=Heterozygosity in 17 populations. Expected heterozygosity for SNPs (HSe) were calculated based on allele frequencies of 55,561 SNPs and the results were shown in Figure A. The HSe in Mlabri (0.197) is lower than that o... |
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The following 6 pages use this file:
- File:Expected heterozygosity of Mlabri.png
- File:Geographical distribution of Thailand population samples.png
- File:Maximum likelihood tree of 17 populations including Mlabri.png
- File:Neighbor-Joining tree of Mlabri and others based on allele sharing distance.png
- File:PCA plot for 446 individuals representing 15 populations including Mlabri.png
- File:Population structure of Mlabri and others (inferred by STRUCTURE and frappe).png